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Set of useful HADDOCK utility scripts

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While using `create_cif.py`, the resulting `.cif` has a different numbering than the input `.pdb`, Green: input .pdb Cyan: output .cif ![Screenshot 2021-03-05 at 13 24 12](https://user-images.githubusercontent.com/9445814/110115301-2c8ead80-7db6-11eb-815f-c27e6d646f3c.png)

bug

More of a recommendation than a real 'issue'. Each script should have its own description and usage written at the top of the file, and print this if ran without...