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verified publisher icon grenaud

Hi

Open sultandromeda opened this issue 1 year ago • 1 comments

I apologize for such a question, but should we use all the generated FASTQ files (including failed ones to merge) for the alignment? Or do you suggest using only the successfully merged fastq files?

sultandromeda avatar May 30 '24 16:05 sultandromeda

We generally map the merged as single-end and the unmerged as paired-end, sort each and merge. You can do this in one line using file descriptors actually.

grenaud avatar May 30 '24 18:05 grenaud

No these are not sample dependent, they're 100% dependent on the machine used.

grenaud avatar Feb 05 '25 10:02 grenaud