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gpoore
Configuring pythontex for ST3 editor
Hi all,
I am having trouble configuring the package for use in my thesis .tex files. I am using Sublime Text 3, TeXLive distro and LaTeXTools to compile my documents. I have double checked that pythontex is supplied within TeXLive, installed Python 3.9.6 and Pygments. Also made sure to use both caption and pythontex packages in my document preamble.
However when I am building my document running programs as follows "pdflatex -> bibtex -> pythontex -> pdflatex -> pdflatex", the log file shows pythontex is being executed and .pytxmcr file is created, but I have no output in my file.
I've only tested with the simplest message using \begin{pycode} environment. The document is using a custom document class (essentially a modified report class).
Would somebody be able to help diagnose where the problem lies? @gpoore
Have you tried compiling on the command line, outside ST3? That could be a good way to determine if this is a TeX Live or an ST3 configuration issue.
@gpoore I've been recommended the same thing on stackexchange, currently trying to work out what exactly to do, only rarely do I do anything in command prompt, so don't really know step by step. I assume I have to navigate to the folder containing the .tex file and then run the same sequence?
Yes, you want to open the command prompt, navigate to the folder (use cd to change directory), and then run all the programs one at a time (pdflatex command, bibtex command, and so on). For the commands, you will need to use the name of the .tex file...the ST3 build configuration may be using some sort of placeholder instead.
I have ran pdflatex Thesis.tex in my directory and it completed fine producing a PDF accordingly (still without pythontex output as you'd expect), but with pythontex Thesis.tex I am getting the following error:
C:\texlive\2021\bin\win32\runscript.tlu:935:` C:\texlive\2021\bin\win32\runscript.tlu:902: program not found (not part of TeX Live): python.exe
which I assume is a problem with the Python installation? Should I reinstall? I wonder why ST3 wouldn't flag this up...
I've checked the TeX Live manager and the package is clearly there
I added python in the preamble to see if that helps, but nothing changes.
Log file after having ran pdflatex Thesis.tex -> bibtex Thesis.tex -> pythontex Thesis.tex -> pdflatex Thesis.tex -> pdflatex Thesis.tex
This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2021/W32TeX) (preloaded format=pdflatex 2021.4.22) 18 AUG 2021 15:00
entering extended mode
restricted \write18 enabled.
%&-line parsing enabled.
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Output written on "G:\My Drive\Uni docs\St Andrews PhD\Thesis\LaTex\MainOutput/
Thesis.pdf" (10 pages, 96648 bytes).
PDF statistics:
130 PDF objects out of 1000 (max. 8388607)
106 compressed objects within 2 object streams
20 named destinations out of 1000 (max. 500000)
33 words of extra memory for PDF output out of 10000 (max. 10000000)
The error message is saying that Python is not installed on the system or cannot be found.
The python package in TeX Live is separate software that is not related to this.
Are you sure you have Python installed? You can try running python --version on the command prompt to find out. It is also possible that Python is installed, but not in PATH, in which case you may need to edit your environment variables or otherwise modify configuration.
100% it is.
But the python --version command indeed confirmed something's not right.
I've just removed it and will try reinstalling in PATH.
Before I do that, can I check this does not break Anaconda distribution? I am currently using some of the apps within it (Jupyter, Spyder) and would rather not have to figure out how to get them to work outside of it.
When you install Anaconda, there is an option to add it to your PATH. If Anaconda is the only Python you are installing under Windows, then adding it to PATH typically shouldn't cause issues. You can add Python to PATH by editing the environment variables; reinstalling isn't necessary though it is an option.
So I reinstalled Python 3.9.6 making sure to add it to PATH and the command prompt version check is now working properly.
I've also checked that Pygments is where it ought to be.
The problem persists - no output from pycode environment in the compiled PDF.
I've ran pdflatex -> pythontex -> pdflatex from the Command Prompt and this time I do get output!
So this now looks like the ST3 builder issue.
The command issued to LaTeXTools is
"builder_settings": {
"windows": {
"script_commands": [
"pdflatex -synctex=1 -interaction=nonstopmode Thesis.tex",
"bibtex Thesis.tex",
"pythontex Thesis.tex",
"pdflatex -synctex=1 -interaction=nonstopmode Thesis.tex",
"pdflatex -synctex=1 -interaction=nonstopmode Thesis.tex"
]
}
}
It looks like ST3 is using its own PATH. You might take a look at https://stackoverflow.com/questions/37017701/where-is-path-in-sublime-text-3-for-windows?rq=1, and may want to find some other resources on customizing ST3 to use the user or system PATH.
I had a brief look but I must say I don't follow. I don't understand the relationships between different PATHs and dont want to break the existing installations. I'll keep reading, but would appreciate any further advice. Otherwise I'll probably try and use a different editor or command line when compiling pythontex, or resort to importing pre-made figures & tables.
I have no experience with Sublime Text, so I can't help configure that.
You might try restarting the computer, just in case Sublime Text is still using the old version of PATH before you reinstalled Python. Otherwise, if everything works at the command prompt, then you'll have to try to determine what ST3 is using for its PATH and how to modify that.