sofima

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sofima.warp.render.tiles raise cv2.error: OpenCV(4.7.0) (-215:Assertion failed) dst.cols < SHRT_MAX && dst.rows < SHRT_MAX && src.cols < SHRT_MAX && src.rows < SHRT_MAX in function 'remap'

3

Following the stitching example for Sofima, the stitching is fine for small number of tiles, however I have 1631 EM tiles for stitching using the following tile_id_map ``` id_map =...

youssefmys

Adding support for Zarr stitching/fusion

2

Hello, this PR adds zarr_processor.py, an entrypoint for processing Zarr datasets. zarr_processor.py imports: - zarr_utils.py for general data loading - coarse_registration.py for initial coarse tile registration - fine_registration.py for elastic...

jwong-nd

Generalize more operations in map_utils to 3d, add support for a batch channel in elastic_mesh_3d, and switch the map_utils and mesh modules to pep-585 type annotations.

copybara-service[bot]

Fix type annotations in render_tiles in warp.py

3

In higher versions of python (>=3.8), you cannot import the `warp.py' module  This error is caused by tuple[int,int] which is not allowed in the function definition, as this is...

KyleLuther

Internal

copybara-service[bot]

Allow an optional TensorStore context when opening descriptors.

copybara-service[bot]

Bugfix: correct start locations in AbsoluteSubvolumeIndexer.

copybara-service[bot]

Add tile masking for coarse offsets computation

1

Precision in estimating coarse offsets for em-datasets can often be improved with custom boolean masks for desired tile-pairs. This is particularly true for tile pairs at the edge or near...

ganctom

Request for Container image version (ex. 24.05)

Kimyongmin1018

The alignment example code fails at the cell starting with `class ReconcileCrossBlockMaps(maps.ReconcileCrossBlockMaps): ` giving the following error: ``` --------------------------------------------------------------------------- TypeError Traceback (most recent call last) Cell In[32], line 14 11...

niltonlk