Issue with missing templates during Multimer Mode running

Open monojun opened this issue 1 year ago • 1 comments

I'm currently practicing using AlphaFold Multimer with the following command:

python3 docker/run_docker.py --fasta_paths=Multimer.fasta --max_template_date=2022-12-31 --data_dir=/data0/db/AFDB/ --model_preset=multimer --output_dir=/home/test/multimer/result

Despite specifying --max_template_date=2022-12-31, I encounter an issue where the template search process stops due to the absence of recent PDB files.

Is there a solution to this problem? And is there a way to skip the template search step if the required PDBs are not found in the downloaded database? Thank you

Mar 28 '24 03:03 monojun

We see this a lot as well. Seems the databases are out of sync. You can patch it by downloading the template in question but it's not a great solution. Maybe fixable if the pdf templates are updated more frequently?

Oct 23 '24 00:10 katemichie