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HHblits query is running time too long!

Open JLHU2021 opened this issue 2 years ago • 3 comments

Hello! I am running the alphafold2 (non-docker version; Miniconda) in a HPC platform (with Nvidia GPUs), predicting the structure of a protein with about 500 amino acid residues. I am sure that the hardwares is OK, including the CPU and disks. But it has been running for over 23 hours，and haven't finished the "Started HHblits query" step after staying in this step for 22 hours. Could anyone help me with this issue?! Many thanks!!! 微信图片_20240123163949

JLHU2021 avatar Jan 23 '24 08:01 JLHU2021

Need more gpu allocation

kylwein avatar Feb 29 '24 17:02 kylwein

Need more gpu allocation

Thank you very much!

JLHU2021 avatar Mar 03 '24 12:03 JLHU2021

Need more gpu allocation

Note that HHblits doesn't use any GPUs, so changing the GPU allocation would have no effect here.

davidecarlson avatar Mar 18 '24 14:03 davidecarlson