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Open CPU-HORDB opened this issue 2 years ago • 5 comments

Traceback (most recent call last): File "/home/inspur/software/anaconda3/envs/alphafold/lib/python3.8/site-packages/docker/api/client.py", line 214, in _retrieve_server_version return self.version(api_version=False)["ApiVersion"] File "/home/inspur/software/anaconda3/envs/alphafold/lib/python3.8/site-packages/docker/api/daemon.py", line 181, in version return self._result(self._get(url), json=True) File "/home/inspur/software/anaconda3/envs/alphafold/lib/python3.8/site-packages/docker/utils/decorators.py", line 46, in inner return f(self, *args, **kwargs) File "/home/inspur/software/anaconda3/envs/alphafold/lib/python3.8/site-packages/docker/api/client.py", line 237, in _get return self.get(url, **self._set_request_timeout(kwargs)) File "/home/inspur/software/anaconda3/envs/alphafold/lib/python3.8/site-packages/requests/sessions.py", line 602, in get return self.request("GET", url, **kwargs) File "/home/inspur/software/anaconda3/envs/alphafold/lib/python3.8/site-packages/requests/sessions.py", line 589, in request resp = self.send(prep, **send_kwargs) File "/home/inspur/software/anaconda3/envs/alphafold/lib/python3.8/site-packages/requests/sessions.py", line 703, in send r = adapter.send(request, **kwargs) File "/home/inspur/software/anaconda3/envs/alphafold/lib/python3.8/site-packages/requests/adapters.py", line 486, in send resp = conn.urlopen( File "/home/inspur/software/anaconda3/envs/alphafold/lib/python3.8/site-packages/urllib3/connectionpool.py", line 790, in urlopen response = self._make_request( File "/home/inspur/software/anaconda3/envs/alphafold/lib/python3.8/site-packages/urllib3/connectionpool.py", line 496, in _make_request conn.request( TypeError: request() got an unexpected keyword argument 'chunked'

During handling of the above exception, another exception occurred:

Traceback (most recent call last): File "docker/run_docker.py", line 267, in app.run(main) File "/home/inspur/software/anaconda3/envs/alphafold/lib/python3.8/site-packages/absl/app.py", line 312, in run _run_main(main, args) File "/home/inspur/software/anaconda3/envs/alphafold/lib/python3.8/site-packages/absl/app.py", line 258, in _run_main sys.exit(main(argv)) File "docker/run_docker.py", line 232, in main client = docker.from_env() File "/home/inspur/software/anaconda3/envs/alphafold/lib/python3.8/site-packages/docker/client.py", line 96, in from_env return cls( File "/home/inspur/software/anaconda3/envs/alphafold/lib/python3.8/site-packages/docker/client.py", line 45, in init self.api = APIClient(*args, **kwargs) File "/home/inspur/software/anaconda3/envs/alphafold/lib/python3.8/site-packages/docker/api/client.py", line 197, in init self._version = self._retrieve_server_version() File "/home/inspur/software/anaconda3/envs/alphafold/lib/python3.8/site-packages/docker/api/client.py", line 221, in _retrieve_server_version raise DockerException( docker.errors.DockerException: Error while fetching server API version: request() got an unexpected keyword argument 'chunked'

CPU-HORDB avatar Jun 13 '23 14:06 CPU-HORDB

When I use alphafold, the following error occurs, please tell me how to solve it, thank you

CPU-HORDB avatar Jun 13 '23 14:06 CPU-HORDB

Likely related to https://github.com/docker/docker-py/issues/3113, work-around could be (with your alphafold venv activated)

pip3 uninstall requests
pip3 install requests=2.28.1

VarIr avatar Jun 19 '23 09:06 VarIr

I keep getting the same error even after doing the uninstall/install requests.

anngregory avatar Jun 30 '23 17:06 anngregory

Likely related to docker/docker-py#3113, work-around could be (with your alphafold venv activated)

pip3 uninstall requests
pip3 install requests=2.28.1

pip3 install requests==2.28.1 did it for me.

FelixHomma avatar Sep 25 '23 12:09 FelixHomma

Likely related to docker/docker-py#3113, work-around could be (with your alphafold venv activated)

pip3 uninstall requests
pip3 install requests=2.28.1

pip3 install requests==2.28.1 did it for me.

me too

Weishuzhen avatar Jan 15 '24 07:01 Weishuzhen