google-deepmind
hhalignment.cpp:3539: MergeMasterSlave error
I have generated more than 20,000 structures with alphafold, now running alphafold 2.2.1, but have three particular protein sequences, Ashbya gossypii proteins AFL131W, ADL346W, and AGR113W, where alphafold fails, and I get the following error message. This problem also occurred when running alphafold 2.1. While these proteins are on the large size, I have generated hundreds of structures for proteins larger than these.
The brief version of the error message is:
... I0721 07:22:02.937924 139643735058240 run_docker.py:256] - 11:21:59.174 ERROR: Error in /tmp/hh-suite/src/hhalignment.cpp:3539: MergeMasterSlave: I0721 07:22:02.937985 139643735058240 run_docker.py:256] I0721 07:22:02.938046 139643735058240 run_docker.py:256] - 11:21:59.174 ERROR: did not find 243 match states in sequence 1 of SRR5579859_7281350. Sequence: ...
Two problems.
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How to fix this problem.
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Why is the term "MasterSlave" used in the code? I personally find the term offensive and inappropriate to use in the code at all, and particularly to use as an output message.
linked below is the more complete error message:
