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Can I run alphafold2 without any structure template information?

Open onlyonewater opened this issue 3 years ago • 2 comments

Can I run alphafold2 without any structure template information? when I download the pdb_mmcif dataset, it is too slow, so I want to test af2 without any structure template in my local machine. How to change the original code???

onlyonewater avatar May 05 '22 13:05 onlyonewater

I think the easiest way is to prepare dummy databases & obsolete.txt file. I uploaded my dummy dbs here. https://github.com/yamule/alphafold/tree/sep/dummy_database Please check readme.txt (the paths are better to be absolute).

yamule avatar May 22 '22 06:05 yamule

OK, thanks, I will have a try!

onlyonewater avatar May 23 '22 13:05 onlyonewater