alphafold
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google-deepmind
Open source code for AlphaFold.
Hello, I tried running Alphafold2 on colab tool. At the 5th step, I got the error: ValueError: Minimization failed after 100 attempts. The structure was not obtained. How to resolve...
I have had this issue for a while now using AlphaFold Colab (for some reason not AlphaFold2 Colab though) where I try and run a prediction, it tells me minimisation...
AMBER relaxation: 86% 6/7 [elapsed: 28:31 remaining: 04:23] /usr/local/lib/python3.7/dist-packages/jax/_src/tree_util.py:201: FutureWarning: jax.tree_util.tree_multimap() is deprecated. Please use jax.tree_util.tree_map() instead as a drop-in replacement. 'instead as a drop-in replacement.', FutureWarning) --------------------------------------------------------------------------- ValueError Traceback...
I set up alphafold without docker on our server and ran alphafold with A100 GPU. During relaxation, "simtk.openmm.OpenMMException: Particle coordinate is nan" error occurred as below ``` I0811 17:57:58.746377 140681736556736...
UTF-8 locale
Hello, I am running an AlphaFold run on a favoenzyme, photolyase. I have had a few successful runs of the program, but suddenly it stopped working and keeps giving me...
Does alpha fold work on the newest (2022) MacBooks that have the proprietary Apple m1 chips in them? I saw it wanted Nivda gpu seeing if there was a work...
openmm move outside, so soft link to simtk/openmm make it compatible. [!440](https://github.com/deepmind/alphafold/issues/410) [!440](https://github.com/deepmind/alphafold/issues/404)
Hello Like others, here in Calmip computation center, we have trouble trying to run alphafold on our HPC cluster, because of the MSAs step: data files are on an nfs-based...
I've been running Alphafold without many problems for a few months. It stopped executing tasks even the ones it used to be able to. Could you please help? : Last...
I am trying to predict the structures of multiple multimers but I find that if I fold them one after another, the memory consumption increases. For example, folding one multimer...
