vimms

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mz_tol and rt_tol are not scan parameters

3

They're actually used for Top-N dynamic exclusion window, so should be removed from scan_params (when making ms2 scans) https://github.com/sdrogers/vimms/blob/master/vimms/Controller/base.py#L72

joewandy

Automate MS-DIAL 5.4 ver

1

I am searching for a way to run MS-DIAL with a command line, preferably from a python code. I know that previous versions contained the MsdialConsoleApp.exe, but current versions lack...

NitTza

Bumps [jupyterlab](https://github.com/jupyterlab/jupyterlab) from 4.4.3 to 4.4.8. Release notes Sourced from jupyterlab's releases. v4.4.8 4.4.8 (Full Changelog) Bugs fixed Debugger: Only send the configurationDone message once as per the DAP #17912...

dependabot[bot]

Bumps [pillow](https://github.com/python-pillow/Pillow) from 11.2.1 to 11.3.0. Release notes Sourced from pillow's releases. 11.3.0 https://pillow.readthedocs.io/en/stable/releasenotes/11.3.0.html Deprecations Deprecate fromarray mode argument #9018 [@​radarhere] Deprecate saving I mode images as PNG #9023 [@​radarhere]...

dependabot[bot]

Bumps [urllib3](https://github.com/urllib3/urllib3) from 2.4.0 to 2.5.0. Release notes Sourced from urllib3's releases. 2.5.0 🚀 urllib3 is fundraising for HTTP/2 support urllib3 is raising ~$40,000 USD to release HTTP/2 support and...

dependabot[bot]

PR to add demo using vimms to generate synthetic data so we can test the performance of a typical untargeted data processing pipeline in LC/MS metabolomics. So we generate chemicals...

joewandy