SyMBac

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Apple Silicon port

1

Hello, First of all, amazing project! I am opening this issue to ask whether you think it is possible to port the code to the M1/2/3 GPUs. The hardware in...

henriquenunez

erezli

Add new models

1

- [ ] Sizer model - [ ] Timer model

georgeoshardo

Position Shift on Symbac 2

2

Hello Georgeos, I am about to push something, but before that I have a question: https://github.com/georgeoshardo/SyMBac/blob/7b8244370f976a79d84f8b31dd53a2c49bba8df2/SyMBac/cell.py#L133 https://github.com/georgeoshardo/SyMBac/blob/7b8244370f976a79d84f8b31dd53a2c49bba8df2/SyMBac/cell.py#L134 Are you sure about the signs above? In my opinion, if the mother...

kmpape

Labelling

3

Hello Georgeos, I was making some progress with our software and wanted to use SyMBac to generate some test sets for our tracking algorithm. I ran `my_simulation.run_simulation` and `my_simulation.draw_simulation_OPL` and...

kmpape

generate synthetic images at multiple objectives

1

- main changes in renderer.py: can input lists of PSFs and real_images - can optimise each set of images separately - will generate data from the same scene at different...

bunirules

Hi i'm trying to generate fluorescent synthetic images for 40x resolution. For real image I loaded the real fluorescent image as a reference. (It's blue_mem_1.tif in zip file) [blue_mem_1.zip](https://github.com/georgeoshardo/SyMBac/files/8051397/blue_mem_1.zip) For...

DustinBaek

Fourier matching doesn't work for some images

1

georgeoshardo

georgeoshardo

Resizing Masks

1

I observed that after resizing, some masks that were not touching before do touch. I think that this happens on the following line: https://github.com/georgeoshardo/SyMBac/blob/9513c2cb4dced2f9ae64591627185b9baae79e5f/SyMBac/renderer.py#L403 Is that correct? There are functions...

kmpape