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Category: B2; Team name: TG; Dataset: Simplicial PPI (HIGH-PPI SHS27k + CORUM)

Open grapentt opened this issue 2 months ago • 2 comments

NOTE: This PR branches from branch 'ppi-data' which contains my A2 submission as it builds on top of it. The actual changes are less than github is showing because it compares diff with main. If we decide to merge this PR, we should first merge the A2 PR.

Note: Due to time reason I could not finish this PR. I have some files locally not pushed yet and did not have the time to run proper benchmarks/tests and write documentation. I will add this and refactor the code once the challenge is officially over.

Checklist

  • [x] My pull request has a clear and explanatory title.

  • [x] My pull request passes the Linting test.

  • [ ] I added appropriate unit tests and I made sure the code passes all unit tests. (refer to comment below)

  • [x] My PR follows PEP8 guidelines. (refer to comment below)

  • [ ] My code is properly documented, using numpy docs conventions, and I made sure the documentation renders properly.

  • [x] I linked to issues and PRs that are relevant to this PR.

  • [x] Extend SCCNN implementation to work with higher order cells I tested the new SCCNN vs the old implementation on the lifted us-county-demos dataset for 50 epochs with seed 123. Results:

    Metric NEW OLD
    MAE 0.472966730 0.472966641
    MSE 0.377394617 0.377394199
    Time ~50 seconds ~62 seconds

Description

Issue

Additional context

grapentt avatar Nov 19 '25 18:11 grapentt

Dear Participants,

This is a final reminder regarding the upcoming challenge deadline.

📅 Deadline: Tomorrow, 25th November 2025

✅ Critical Requirement: Please ensure your branch is passing all CI/CD tests.

If you have any pending changes, please push them and verify your build status as soon as possible.

Good luck!

levtelyatnikov avatar Nov 24 '25 12:11 levtelyatnikov

Hi @grapentt! Feel free to modify pyproject.toml file to include any extra dependencies you might need for your submission. Good luck!

gbg141 avatar Nov 26 '25 07:11 gbg141