cloudgene

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Hard-coded database connection pool size too small, requests failing

1

## Problem During periods of high traffic, users are randomly unable to connect to the website. Logs trace this to a connection pooling problem: although our database can support hundreds...

abought

[bug] Uncaught exceptions lead to unclear job failures

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## Summary Certain kinds of QC errors are not handled in the code, and lead to mysterious job failures that a user cannot diagnose or fix. This is one of...

abought

## Summary Certain job metrics are not being stored correctly in the database. This makes it more difficult to investigate system performance questions like "how many people would be affected...

abought

## Purpose The "job status" page provides feedback by refreshing every 5 sec. When the queue is long, the server can experience loss of service quality just from status page...

abought

# Summary Currently, if a user deletes their account while a job is in the queue, it will continue running even though there may be no way to deliver results....

abought

Hi, Great application ! if I may, I think adding a dynamic visibility to the inputs deemed optional might be a helpful addition. For instance, having input options relevant to...

VChapdelaineT

[Dockerfile: ](https://github.com/genepi/cloudgene/blob/master/Dockerfile) `FROM genepi/cdh5-hadoop-mrv1:latest` [[[cdh5-hadoop-mrv1](https://github.com/genepi/cdh5-hadoop-mrv1/tree/master)](https://github.com/genepi/cdh5-hadoop-mrv1/blob/master/Dockerfile):](https://github.com/genepi/cdh5-hadoop-mrv1/blob/master/Dockerfile) `FROM ubuntu:14.04` It looks like Cloudera has dropped access to later versions of CDH: ``` As of February 1, 2021, all downloads of CDH and...

gjmulder

Hey, has Cloudgene been tested with Hadoop 3.3.6 ? If not, which latest Hadoop version is supported?

mamanambiya

Bump json-schema and jsprim in /src/main/html/webapp

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Bumps [json-schema](https://github.com/kriszyp/json-schema) and [jsprim](https://github.com/joyent/node-jsprim). These dependencies needed to be updated together. Updates `json-schema` from 0.2.3 to 0.4.0 Commits f6f6a3b Use a little more robust method of checking instances ef60987 Update...

dependabot[bot]

Bump set-value and union-value in /src/main/html/webapp

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Bumps [set-value](https://github.com/jonschlinkert/set-value) and [union-value](https://github.com/jonschlinkert/union-value). These dependencies needed to be updated together. Updates `set-value` from 2.0.0 to 2.0.1 Commits bb0f038 2.0.1 cb12f14 ensure only valid keys are used See full diff...

dependabot[bot]