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Add bio.tools IDs to tool wrappers

Open supernord opened this issue 2 years ago • 7 comments

supernord avatar Oct 31 '23 12:10 supernord

Adding multiple bio.tools IDs as part of BioHackathon 2023 project 25

supernord avatar Oct 31 '23 12:10 supernord

@nsoranzo - should this one be deprecated as well? https://github.com/bgruening/galaxytools/blob/master/tools/rna_tools/rRNA/rRNA_prediction.xml

supernord avatar Nov 03 '23 03:11 supernord

@nsoranzo - should this one be deprecated as well? https://github.com/bgruening/galaxytools/blob/master/tools/rna_tools/rRNA/rRNA_prediction.xml

I think so, @bgruening what do you think?

nsoranzo avatar Nov 03 '23 08:11 nsoranzo

Yes. Thanks @supernord

bgruening avatar Nov 03 '23 15:11 bgruening

Should the following also be deprecated?

  • cd_hit_dup: https://github.com/galaxyproject/tools-devteam/blob/main/tools/cd_hit_dup/cd_hit_dup.xml
  • quality_filter: https://github.com/galaxyproject/tools-devteam/blob/main/tools/quality_filter/quality_filter.xml
  • lca_wrapper: https://github.com/galaxyproject/tools-devteam/blob/main/tool_collections/taxonomy/lca_wrapper/lca.xml
  • t2ps_wrapper: https://github.com/galaxyproject/tools-devteam/blob/main/tool_collections/taxonomy/t2ps/t2ps_wrapper.xml
  • t2t_report: https://github.com/galaxyproject/tools-devteam/blob/main/tool_collections/taxonomy/t2t_report/t2t_report.xml

supernord avatar Nov 05 '23 22:11 supernord

How to continue here?

bernt-matthias avatar Mar 08 '24 18:03 bernt-matthias

Should the following also be deprecated

Depends .. could you tell us the reasons for each of these cases?

bernt-matthias avatar Mar 12 '24 10:03 bernt-matthias