Linux Handbook for Bioinformatics

This repository contains all the insights, useful tricks, interesting usages for Linux Shell commands, it will be especially useful for people working in Bioinformatics field. I will be the maintainer of this repository and I will update its content periodically.

blog

https://towardsdatascience.com/linux-shell-commands-can-be-your-time-saver-eabee76914b

Index

1. wc, cp, mv command
2. find commands
3. Understanding Linux and Shell
4. Shell data type
5. git command
6. batch processing and parallelization
7. compress, decompress, archive
8. Manipulate path of file
9. Using Python to call Shell
10. md5sum check
11. text wranling
12. file and folder size
13. common conda commands
14. Learn bam file
15. LSF job scheduler
16. awk usage
17. grep usage
18. display and kill process
19. Downloading
20. sed usage
21. Array
22. string
23. If condition
24. numerical calculation
25. Run in background, process, kill
26. How to install R packages?
27. Multiple lines for if and foor loop
28. For and Seq command for iterating numerical variables
29. slurm job scheduler
30. SSH key
31. Permission
32. docker, singularity
33. stay tuned