bioseq
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fkeck
A Toolbox for Manipulating Biological Sequences in R
Hello! I was trying to get the most representative sequence in a AAstring object, while trying to avoid ambiguity, so gave a try to seq_consensus, but found the following issue:...
If i read a fasta file using either read.FASTA or read_fasta, convert it to a tibble using as_tibble.DNAbin and then convert to DNAbin using as_DNAbin, i get the following error:...
- [x] seq_detect_pattern 3277d1605d1600c75781606d7b0a8daf13d3948b - [x] seq_crop_pattern b033d3e46525ee71e6179831c439a8ecb0ab588c
Functions to check: - seq_translate - seq_rev_translate
They are currently missing because merged with other table: Table 7 -> table 4. Table 8 -> table 1 But we could add and link them for compatibility with data...
Add functions `read_fastq` and `write_fastq`. Although `bioseq` is not really designed to work with raw HTS data, this can be useful sometimes.
Currently genetic codes are identified by their number in functions like `seq_translate`. Add possibility to use a text string instead.