Marius Bjørnstad

@ramprasadn This seems to have worked :)

I've tested the most recent version of this PR and I do get an error. I made a separate issue because I also get the error in pipeline version 2.0.x...

Submitted issue to BioContainers: https://github.com/BioContainers/containers/issues/528

Status update, still not ready. I've got the BioContainer merged for version 1.6 and 1.6.post1 of CADD-scripts. I realised that version 1.6 is crashing when the set of variants is...

Yes it's called 1.6.post1 in the git tag, so that's what I've gone with. https://github.com/kircherlab/CADD-scripts/releases Good that it works with WGS for you. I've had issues with CADD, but I...

Ah yes, sorry I forgot. It's solved by a new version of the module in nf-core. I am trying to get CADD 1.7 to work in the same way though,...

> Now I am getting the following: > > -[nf-core/raredisease] Pipeline completed with errors- > ERROR ~ Error executing process > 'NFCORE_RAREDISEASE:RAREDISEASE:ANN_CSQ_PLI_SV:ADD_MOST_SEVERE_CSQ (justhusky)' > ... UnboundLocalError: local variable 'transcripts' referenced...

I've done some work on trying to package CADD v1.7 and have not succeeded. I'd just like to post the information here, in case it may be helpful. The approach...

Seems like mosdepth v0.3.8 in the docker and apptainer containers doesn't support the `--d4` option. I don't see anything in mosdepth's repo indicating that they dropped support for this. It...

Yes, overriding the mosdepth images works well, thanks for the tip :) don't know if this is a bug in the mosdepth image. We can surely test the new version...