FlowCytometryTools
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eyurtsev
A python package for visualization and analysis of high-throughput flow cytometry data
Hello, Using FlowCytometryTools, we have had a number of issues running this code. We tend to get the error, "collections' has no attribute 'MutableMapping'". When calling FCMeasurment, we get that...
This is all @borcuttjahns work, but I wanted to open this up so that we can close the fork.
Looks like version 0.51 does not have the updated bases.py regarding the addition of collections.abc import FlowCytometryTools as fct Traceback (most recent call last): File "", line 1, in import...
Dear Dr. Yurtsev, I work as a cytometrist at the Izmir Institute of Technology. I need to make doublet discrimination and compensation between fluorophores. May I consult you on a...
It would be cool to open LMD files (generated for example by Gallios machines). Its possible to do it in R, so one could in principle reimplement in python or...
I used jupyter notebook and followed the tutorial, when I input ``` tsample.view_interactively(backend='webagg') ``` but the page `127.0.0.1:8080` shows `500: Internal Server Error` and nothing else. Then I looked the...
The tutorial on [How to install](https://eyurtsev.github.io/FlowCytometryTools/install.html) just shows `pip install`, and I'm wondering if there is a way to conda install it. I googled but didn't find it.
Hi, I followed closely the tutorial, and can work without any issue with files containing only one sample. However, when attempting at loading a 96 well plate .fcs file, I...
Hi, I am currently working with image analysis data. There I would love to be able to gate the cells as I could do in fcs. The problem is that...
For example, one can imagine using Python to carry out some transformations on flow cytometry data, but then use other flow cytometry tools to visualize and further process the data....
