pastml
pastml copied to clipboard
evolbioinfo
Ancestral character reconstruction and visualisation for rooted phylogenetic trees
Dear Anna, Thanks for developing PastML and all updates, it is very useful to our current analysis. I see from https://github.com/evolbioinfo/pastml/issues/16, you have updated a feature to parse compressed graphs...
Implement model selection (between F81, JC and EFT) based on AIC/BIC
When a collapsed node does not represent a monophyletic clade, show the information on the number and the sizes of the monophyletic clades of the corresponding state included in it....
Add MPPE [[Oliva et al.](https://www.biorxiv.org/content/biorxiv/early/2018/09/05/409029.full.pdf)] to available methods.
Currently the node importance is calculated by multiplying the node size by the sizes of all the branches on the path to the root. It therefore corresponds to the number...
It took me a while to discover that the reason I was getting funky pastml results was that my input tree had redundant internal node labels. While this is clearly...
**Describe the bug** I set up pastML from bioconda on a linux instance. Can't seem to run even the test data. Thanks for any hint on how to solve this!...
Hello! First off, thank you for making this software. I am interested in looking at changes in gene presence absence within a population. I have a phylogeny for my genome...
I try to run the PastML protocol using a tree with 562 tips, however when i start the run this notification comes to my shell Traceback (most recent call last):...
Metadata
Owner
Metadata
Ancestral character reconstruction and visualisation for rooted phylogenetic trees