etetoolkit
Bug: ERROR: inside CodeML!!
Hi developers,
I would say thanks for you program. It is versatile and easy to use. However, I got one error message with the ete3 evol module. Please, can you check to the error paste below?
Thanks you for your help, Sébastien
% ete3 evol -t ${path1}/SE.aa.filtered.aln.trim.fasta.contree --alg {path1}/SE.nt.filtered.aln.trim_NT.fasta -o {path2}/se --models fb M2 SLR --cpu 10
Using: /Users/sbelanger/opt/miniconda3/envs/ete3/bin/ete3_apps/bin/Slr Using: /Users/sbelanger/opt/miniconda3/envs/ete3/bin/ete3_apps/bin/codeml
Running CodeML/Slr (10 CPUs)
- processing model fb (fb~57824db4b35554a7790edcc7388642b1)
- processing model M2 (M2~f817670bfdd516a90765a724391e787b) ERROR: inside CodeML!! CODONML in paml version 4.8a, July 2014
Error in sequence data file: L at 2123 seq 3. Make sure to separate the sequence from its name by 2 or more spaces.
- processing model SLR (SLR~adb6e9c6866de74f8aa616edd21ad0c3) ERROR: inside CodeML!! CODONML in paml version 4.8a, July 2014
Error in sequence data file: L at 2123 seq 3. Make sure to separate the sequence from its name by 2 or more spaces.
