clusterExperiment
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epurdom
R package of techniques for comparing clusterings of single-cell sequencing data
Hi, I recently tried to install `clusterExperiment` via Bioconductor, and got the following error: ``` Warning: dependency ‘howmany’ is not available trying URL 'https://bioconductor.org/packages/3.18/bioc/src/contrib/clusterExperiment_2.22.0.tar.gz' (...) ERROR: dependency ‘howmany’ is not...
Hello, I want to run clusterExperiment using a custom function. I was wondering if it would be possible to run the Seurat Functions used for clustering? Maybe something like this:...
Hello, I'm trying to run RSEC() on a data matrix that contains 1000 genes and 12170 cells. I got the error as below: Error in (function (classes, fdef, mtable) :...
I am experiencing a similar issue as this .When I try to install clusterExperiment on macOS it errors out as follows ```r BiocManager::install("clusterExperiment") ``` 'getOption("repos")' replaces Bioconductor standard repositories, see...
This message has been annoying us for a long time. I'm opening an issue because I found where it comes from. The problem is that the class "Annotated" is defined...
Create a `minSizes` argument for merging, so that the algorithm just always merges a cluster in if its less than a certain size. It might also speed up the DE...
And make sure matches dendro if `contrastType="Dendro"`
Also a plotting function. If one cluster, then pairwise between clusters. If two clusters then correlations between pairs of their clusters. Names: `clusterCor` and `plotClusterCor`