enthought
Some plot types "hang" on NaN data
From discussion offline:
Some plot types (FilledLinePlot and PolygonPlot being the ones that I tested) don’t do well with NaN data. If you try to plot a line or polygon where one of the coordinates is NaN, the application will hang (the NaN gets converted somewhere in Agg to some obscenely large integer, and Agg will keep itself busy trying to draw a line to that faraway location).
@corranwebster's answer:
Yes - it would be better to raise a ValueError or something than hang.
Another possibility which would match behaviour of line plots would be to break into runs of non-NaN values and then draw a separate polygon for each. That might give some odd results, though, and would require some re-working of the code.
Final possibility would be to just drop the NaN values silently before calling the rendering code.
@rkern's answer:
Yeah, the Chaco renderers have the responsibility of cleaning the data of non-finite (or even just out-of-bbox) data before creating the view-space coordinates that are given to the GC. It's mostly obvious how to do that for lines and points, but a little less obvious how to do that for polygons, so I suspect a simple sin of omission there.
The _gather_points() method is typically where this is done.
The code below will hang:
import numpy as np
from enable.api import Component, ComponentEditor
from traits.api import HasStrictTraits, Instance
from traitsui.api import UItem, View
from chaco.api import ArrayPlotData, Plot
class Demo(HasStrictTraits):
view = View(UItem('plot', editor=ComponentEditor()))
plot = Instance(Component)
def _plot_default(self):
edges = np.linspace(0, 1, 10)
hist = np.full(edges.shape[0], 0)
hist[5] = np.nan
plot_data = ArrayPlotData(hh_hist=hist, hh_edges=edges)
plot = Plot(plot_data)
plot.plot(
('hh_edges', 'hh_hist'),
type='filled_line',
render_style='connectedhold',
fill_color='black',
alpha=0.5,
)
return plot
if __name__ == '__main__':
Demo().configure_traits()
OS, Python version: Tested under Python 2.7 on Mac OS X 10.11 and Linux (Ubuntu 14.04)
Running the given code I now see the following immediate failure:
Traceback (most recent call last):
File "examples/demo/junk.py", line 32, in <module>
Demo().configure_traits()
File "/Users/aayres/Desktop/traits/traits/has_traits.py", line 2095, in configure_traits
args,
File "/Users/aayres/.edm/envs/chaco-test-3.6-pyqt5/lib/python3.6/site-packages/traitsui/qt4/toolkit.py", line 233, in view_application
context, view, kind, handler, id, scrollable, args
File "/Users/aayres/.edm/envs/chaco-test-3.6-pyqt5/lib/python3.6/site-packages/traitsui/qt4/view_application.py", line 84, in view_application
context, view, kind, handler, id, scrollable, args
File "/Users/aayres/.edm/envs/chaco-test-3.6-pyqt5/lib/python3.6/site-packages/traitsui/qt4/view_application.py", line 126, in __init__
args=self.args,
File "/Users/aayres/.edm/envs/chaco-test-3.6-pyqt5/lib/python3.6/site-packages/traitsui/view.py", line 462, in ui
ui.ui(parent, kind)
File "/Users/aayres/.edm/envs/chaco-test-3.6-pyqt5/lib/python3.6/site-packages/traitsui/ui.py", line 244, in ui
self.rebuild(self, parent)
File "/Users/aayres/.edm/envs/chaco-test-3.6-pyqt5/lib/python3.6/site-packages/traitsui/qt4/toolkit.py", line 163, in ui_live
ui_live.ui_live(ui, parent)
File "/Users/aayres/.edm/envs/chaco-test-3.6-pyqt5/lib/python3.6/site-packages/traitsui/qt4/ui_live.py", line 43, in ui_live
_ui_dialog(ui, parent, BaseDialog.NONMODAL)
File "/Users/aayres/.edm/envs/chaco-test-3.6-pyqt5/lib/python3.6/site-packages/traitsui/qt4/ui_live.py", line 65, in _ui_dialog
BaseDialog.display_ui(ui, parent, style)
File "/Users/aayres/.edm/envs/chaco-test-3.6-pyqt5/lib/python3.6/site-packages/traitsui/qt4/ui_base.py", line 286, in display_ui
ui.owner.init(ui, parent, style)
File "/Users/aayres/.edm/envs/chaco-test-3.6-pyqt5/lib/python3.6/site-packages/traitsui/qt4/ui_live.py", line 225, in init
self.add_contents(panel(ui), bbox)
File "/Users/aayres/.edm/envs/chaco-test-3.6-pyqt5/lib/python3.6/site-packages/traitsui/qt4/ui_panel.py", line 259, in panel
panel = _GroupPanel(content[0], ui).control
File "/Users/aayres/.edm/envs/chaco-test-3.6-pyqt5/lib/python3.6/site-packages/traitsui/qt4/ui_panel.py", line 617, in __init__
layout = self._add_items(content, inner)
File "/Users/aayres/.edm/envs/chaco-test-3.6-pyqt5/lib/python3.6/site-packages/traitsui/qt4/ui_panel.py", line 883, in _add_items
ui, object, name, item.tooltip, None
File "/Users/aayres/.edm/envs/chaco-test-3.6-pyqt5/lib/python3.6/site-packages/traitsui/editor_factory.py", line 132, in simple_editor
description=description,
File "/Users/aayres/.edm/envs/chaco-test-3.6-pyqt5/lib/python3.6/site-packages/traitsui/editor.py", line 459, in __init__
self.old_value = getattr(self.object, self.name)
File "examples/demo/junk.py", line 17, in _plot_default
hist[5] = np.nan
ValueError: cannot convert float NaN to integer
