Sequence matched CDS

[PenilCelis]

Hi all, I was wondering how I could obtain the sequence of the matched CDS between two genomes. Thank you in advance, Arancha

[endixk]

Dear Arancha, The feature you requested is not supported in the current stable version, however I find it useful and implemented it 😄

Please use this binary: EzAAI_v1.2.2.unstable.jar.zip

To obtain the matching pairs, run the calculate module as following:

java -jar EzAAI_v1.2.2.unstable.jar calculate -i <IN_1> -j <IN_2> -o <OUT> -match <MATCH>

Matching FASTA headers and their sequence identities will be written in the file designated to the -match flag.

You can convert the database into FASTA file as following:

java -jar EzAAI_v1.2.2.unstable.jar convertdb -i <DB> -o <FASTA>

This feature will be included in the next stable release. Please test out and let me know if you encounter any problem.

[PenilCelis]

Thank you very much! I really appreciate it! It works perfectly fine.