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Add references for algorithms in docstring

Open kaizu opened this issue 7 years ago • 3 comments

kaizu avatar Dec 17 '18 17:12 kaizu

  • ode

Ordinary Differential Equations. "Explicit Euler", "Cash-Karp", or "Controlled Rosenbrock 4". See Boost.Numeric.Odeint https://www.boost.org/doc/libs/release/libs/numeric/odeint/

  • gillespie

The Gillespie algorithm. The direct method. https://doi.org/10.1021/j100540a008

  • meso

The spatial Gillespie algorithm. The mesoscopic cubic-lattice-based algorithm. The next subvolume method.

  • bd

The Reaction Brownian Dynamics (RBD) method.

  • spatiocyte

The microscopic HCP-lattice-based algorithm. The Spatiocyte algorithm.

  • egfrd, sgfrd

The enhanced Green's Function Reaction Dynamics (eGFRD) method.

kaizu avatar Jun 27 '19 11:06 kaizu

Moved to https://github.com/ecell/ecell4_docs/issues/23

kaizu avatar Apr 29 '20 06:04 kaizu

This issue requests to update docstring. Reopen.

kaizu avatar Apr 29 '20 07:04 kaizu