Rate law dependent synthesis

Open kaizu opened this issue 6 years ago • 2 comments

Enable the following model:

with reaction_rules():
    ~X > X | (k * X / (K + X))

run_simulation(t, solver='gillespie')

Except for ode, no solver supports rate law dependent reactions. This proposal suggests accepting the rate law for synthetic reactions (zero-th order).

Feb 15 '19 03:02 kaizu

gillespie and meso support it now.

Mar 03 '19 07:03 kaizu

[x] gillespie
[x] meso
[ ] spatiocyte
[ ] bd
[ ] egfrd

Jun 13 '19 08:06 kaizu