ecell4

ecell4 copied to clipboard

ecell4 1.2.0 does not work with ecell4_base 2.0.5

1

This is due to forgetting to update setup.py We need to increase the version of `ecell4_base` in the ecell4 `setup.py` from 2.0.5 to 2.1.0.

kozo2

cyjs doesn't properly work

2

Labels are invisible. 

kaizu

kaizu

```python fig, ax = plt.subplots() _ = ax.plot(x, y, 'k--') plt.close() fig ``` https://qiita.com/U25CE/items/c2714bf5903de84bf47b

kaizu

```python plotting.plot_number_observer(obs, x='x', y='y', z='z') ```

kaizu

Mathematical functions in rate laws cannot be pre-defined

1

``` python from numpy import exp from ecell4 import * with reaction_rules(): A > B | exp(A) * A m = get_model() print([rr.as_string() for rr in m.reaction_rules()]) ``` must show...

kaizu

https://arxiv.org/help/api/user-manual

kaizu

I will add some tests using https://github.com/sbmlteam/sbml-test-suite to ecell4.

kozo2

Although I can not give a concrete example yet, but it seems possible to use this Netflix integration testing method for E-Cell4. https://medium.com/netflix-techblog/scheduling-notebooks-348e6c14cfd6

kozo2

Support PySB

5

kaizu