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dynverse
Visualising single-cell trajectories, including comparisons between two models 📈
I want to change the plotting order in accordance to the expression level of a certain gene/set of genes: cells expressing a certain gene at a higher level are plotted...
We test th examles under Rsudio as the following command, howerver, it reports errors, we can't find the reason, plot_dimred(example_bifurcating) errors: Coloring by milestone Using milestone_percentages from trajectory Loading required...
It worked before and then got the error since I updated some packages. I seems there is no argument `return_other_dimreds` for function `get_dimred` in package `dynwrap`. The command I used:...
Hello the links to tutorial and documentation is not working. is the site still supported? Best -B
Hi, Thanks a lot for developing the powerful dynverse series software. But I come across an issue in plotting, could you please help me to fix it. This is the...
Hi! Thanks for developping of this awesome package! Could you help me to resolve the following error? This is the code that I used and the error message that I...
  Hi, So I have this converging trajectory and when I visualize it, I can't figure out how to make the pseudotime fit the milestone network. `dynplot::plot_dimred(converging_traj,dimred = dyndimred::dimred_mds(converging_traj$expression),color_cells...
Hi ! Is there a function that allows to make a scatter plot of one or more genes according to the pseudo time ? Nicolas
Labeling of the edges could help make the trajectory more interpretable. By adding the edge labels to the dimred plot and the heatmap, it would become easier to link information...
Target speeds: - 1K: < 5 seconds - 10K: < 10 seconds - 1M: < 30 seconds This should be included in the tests :slightly_smiling_face:
