PyRate
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dsilvestro
PyRate is a program to estimate speciation, extinction, and preservation rates from fossil occurrence data using a Bayesian framework.
`tr.join` is an efficient way to concatanate strings than using a for loop
PyRate's LTT plot function, called with the -ltt 3 option, draws an incorrect number of diversity trajectories. Instead of showing all replicates (e.g. 20 replicates and 10 resampled models from...
Dear expert, I got "Module FastPyRateC was not found" when I run analysis on Mac M1 Pro. I choose to install FastPyRateC library atuomatically, it failed and got error: >Could...
Hi, I am new to PyRate, and I am rerunning an analysis by Fabien Condamine: [https://www.nature.com/articles/s41467-021-23754-0.pdf](https://www.nature.com/articles/s41467-021-23754-0.pdf) I am running some commands with the latest version of PyRate, and I get...
Hi, I've been running PyRate v 3.1.3 using RJMCMC for my dataset. When running the following command, python PyRate.py ./Data_PyRate.py -j 1 -A 4 -qShift ./epochs.txt -mG -pP 1.5 0...
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PyRate is a program to estimate speciation, extinction, and preservation rates from fossil occurrence data using a Bayesian framework.