zinbwave
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drisso
Clone of the Bioconductor repository for the zinbwave package, see https://bioconductor.org/packages/zinbwave
Dear Davide. We recently came across ZINB-WaVE and find the approach very convincing. Moreover, the approach is very clearly coded. However, one thing I don't understand is why by default...
I am using zinbwave on the count matrix from single-cell data for the Acorde package. But I am getting the following error: sce.2.1_zmb
Hello there and thank you in advance for your help! I am running zinbwave on a single cell dataset with many 0s. The following is my code and error: ```...
Hello, Thank you very much for your package. I have questions about model and K value settings in zinbwave function when combining with DESeq2. I’m working on SMART-seqHT dataset of...
Hi, When I try to compute the observational weights using by supplying a fitted model object to the zinbwave function ```zinbwave(sce10x, fitted_model = zinb, K = 0,observationalWeights = TRUE)``` I...
Hi, I added V matrix (gene-level covariates) in ZinbFit, but got an error message: Error in validObject(.Object) : invalid class “ZinbModel” object: beta_mu must have J columns! This is my...
Hi, I have been trying to run zinbwave on my dataset and haven't managed to finish it successfully. Specifically, I have not found a way to run it through with...
Hi I have been trying ZINB-Wave for generating weights for edgeR for a 10x dataset and I have got some results that look a bit strange. Here is what I...
Hi Davide, I looked at the code for the functions zinbAIC and zinbBIC. It seems like the rows and columns are switched in the if function: if ((nSamples(model) != nrow(x))|(nFeatures(model)...
https://github.com/drisso/archive-zinbwave/issues/45 https://github.com/drisso/archive-zinbwave/issues/42 https://github.com/drisso/archive-zinbwave/issues/41 https://github.com/drisso/archive-zinbwave/issues/39 https://github.com/drisso/archive-zinbwave/issues/25 https://github.com/drisso/archive-zinbwave/issues/24
