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dpeerlab
Supervised Pathway DEConvolution of InTerpretable Gene ProgRAms
I got a **factor A** whose top50 genes with **high gene weight**, and a **factor B** whose top50 genes with **low gene weight**. Does it mean **factor A** is of...
> As input, the algorithm receives a normalized cell-by-gene **count matrix**. Because I want to use the integrated scRNA data, I only have the processed cell-by-gene expression matrix. Will it...
I'm looking to use the GPU implementation of Spectra as mentioned in issue #21. When you load `from Spectra import Spectra_gpu as spc_gpu` you get this info: ``` Spectra GPU...
Hello, We use sBatch system to monitoring tasks. When running spectra, we found that spectra would call more cores than we assigned to it. Could you explain spectra‘s cpu scheduling...
Without this patch parameter initialization fails with empty data for `torch.stack`
Hello, I am trying to run spectra using cell type labels: ``` import Spectra import scanpy as sc import pandas as pd import numpy as np import cytopus as cp...
Trying to call `est_spectra` with a gene_set_dict of the form `{"global": dict of gene sets}` and `use_cell_types=False` leads to an unbound local variable error for `is_global` after training. Looking through...
Good day! I want to use spectra for each main group of cells (myeloid, lymphoid, etc) in my tumor data. In that case, I want to set `use_cell_types=False`, but this...
