GRNsight
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dondi
Web app and service for modeling and visualizing gene regulatory networks.
- Refactor Code into reusable code in utils.py - Create an all in one `loader.py` to load all data into expression, network, and protein-protein interactions database - Create an all...
We are going to start using GRNsight in BIOL 367 this week. I was writing the protocol and had occasion to look up "ERT1" in the "Load from database" GRN....
I'm opening this issue so that you can post a comment here when the GRNsight beta server is refreshed, so that @kdahlquist (and others) will get an e-mail notification.
Do this in beta 7.0.8: - load a GRN from the database - uncheck node coloring - recheck nod coloring--the checkbox gets checked and the node coloring comes back in...
After exporting a graph to SVG, the D-pad can be clicked and the zoom slider can be moved. However, the cursor hand does not close, and the graph does not...
As a stopgap before working on #1068, we should include a disclaimer that we are displaying gene expression (mRNA-level data) and not protein-level data somewhere in the UI
I already see that feature in the version 7.0.2 beta. However, there is different options between the top menu and the side panel. - Side panel: - Top menu: -->...
Importing new files has some delays. For example, if you load an error file and want to reload another file, it still shows the previous error file, which needs to...
Do this: - upload an unweighted GRN from a file with no expression data - nodes are colored gray instead of white Need to check to see if this also...
Do this on either production or beta 7.0.8: - Load Demo number 2 - From the View menu, select small - select medium - select large - select fit to...