epitopepredict

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netMHCpan doesn't seem to work on epitopepredict

3

Hi, I would like to use epitopepredict for my predictions. Tepitope and mhcflurry work, but netMHCpan does not. I use the same test.config file for all of the mentioned predictors....

christelvanharen

Hi! I’m using tepitope and basicmhc1 models and i noticed the cutoff method in tepitope work well but not in basicmhc1. In particular, with basicmhc1 epitopes with rank 1 are...

francescopatane96

KeyError: 'X' for NLF encoder

1

I'm using Blosum62 and NLF encoders. However for an amino acid sequence 'GILKDYPHSAFTLEKKVIKTEPEDSRXXXXX' NLF encoder gives a key error. `KeyError: 'X'` I know the meaning of the error: the letter...

berkedilekoglu

Installing netMHCpan and netMHCIIpan

3

I'm trying to install netMHCpan and netMHCIIpan but I'm with difficulties. In the terminal shows these output 1 protein sequences /bin/sh: 1: netMHCpan: not found netmhcpan not installed

pedromachadorodri

Hello, looks like there are a lot of dependency issues due to the usage of deprecated functions in numpy, pandas...

jasonzhao0307