biobert
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dmis-lab
Bioinformatics'2020: BioBERT: a pre-trained biomedical language representation model for biomedical text mining
Bumps [tensorflow-gpu](https://github.com/tensorflow/tensorflow) from 1.15.2 to 2.9.3. Release notes Sourced from tensorflow-gpu's releases. TensorFlow 2.9.3 Release 2.9.3 This release introduces several vulnerability fixes: Fixes an overflow in tf.keras.losses.poisson (CVE-2022-41887) Fixes a...
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What is the split used for the JNLPBA dataset? And why do we have 4 splits i.e., train.tsv, train_dev.tsv, devel.tsv, test.tsv?
Hi , this is a great project indeed. I was just wondering , can we use BioBERT for multilabel classification problem out of the box ? or do we need...
i downloaded the transfromers model and downloaded biobert-base-cased-v1.1, and downloaded the data what should i do next and how to run the code inorder to get an output espically for...
I want to use this Model for NER and for my dataset. Being too much new to this I can't find my way to get my data tagged with it....
Thank you for you wonderful BioBert pretrained model. As a part of my work, I would like to have BioBert model trained in my medical corpus (without labels) before use...
Goal: Add tokens to the tokenizer for clinical domain to prevent the tokenizer from tokenizing it. I am using the following code to add a few tokens to the tokenizer:...
Hi, I would like to know how to run the run_re.py script for chemprot dataset. CHEMPROT dataset is a multi-class classification dataset, I simply run the run_re.py script with the...
hi, I'm running biobert on the cluster for various classfication, training and prediction tasks. How do I run biobert on a specific corpus of text for classification, eg a specific...
I found that the losses of the [PAD] tokens were also computed when training the model. But in fact, we should filter out them as https://github.com/kyzhouhzau/BERT-NER/blob/master/BERT_NER.py does. Why didn't you...
