Desislava Petkova

Now I'm wondering how to implement this preprocessing step..... Can you verify that I understand correctly what "the maximum 10sec/30sec nonoverlapping epoch of activity per minute" means? ``` r library("lubridate")...

Hello Can you say how many individuals and (bi-alleleic) SNPs you have in your dataset, after the transformation? Desi

In your dataset, there are more SNPs than individuals, so the dissimilarity matrix `diffs` should be a valid full-rank distance matrix *if there are no missing genotypes*. Usually however there...

You are correct that `mcmcpilogl.txt` stores the prior in the first column and the likelihood in the second column (on the log scale, after burn-in and thinning; the log posterior...

I suspect there is linear dependence among the sampled individuals. I sub-sampled 50 out of the 89 individuals and then EEMS runs fine. ``` coord

To start with, there was an error during building the `reemsplots2` package. It seems that's fixed and now I can write the following example: ``` mcmcpath

Testing on some more examples, the "polygon edge not found" error does indeed show up from time to time. This seems to be a known ggplot2 issue: https://github.com/tidyverse/ggplot2/issues/2252. However, the...

Why are you using anaconda?

Installation instructions for Mac OS X: 1. Install the [Homebrew](https://brew.sh) package manager. 2. Install boost with `brew install boost`. 3. Install eigen3 with `brew install eigen`.

Installation instructions for ubuntu (requires `sudo`). 1. Install boost with `sudo apt-get install libboost-all-dev`. 2. Install eigen3 with `sudo apt-get install libeigen3-dev`. 3. Update `EIGEN_INC` in the Makefile. ``` EIGEN_INC...