Dilan Pathirana

> So how shall we handle that? Drop line numbers? Just print the offending row? It's not too helpful for whitespace-only rows, but they should be relatively easy to spot...

> 1. Are you in favor of timecourse specification -- i.e., instantaneous changes in parameter or species values, at specified timepoints? Yes, it would help with a few modeling projects...

@PEtab-dev/petab-editors

Thanks for the feedback already! Especially the "duration" correction. For now, I made the "duration" -> "isRate" change in Tables 3 and 4, and added Feedback item 1.2. > 1.2....

Just a heads up, we will have a 1 hr PEtab breakout session at COMBINE 2023 in a few weeks. It's great to see this discussion here, I'm also interested...

Could change `class OptimizerResult(dict)`, `class ProfileResult(dict)`, etc. to instead inherit from some `class TaskResult(dict)` that looks like ```python class TaskResult(dict): def __init__(self): self.set_common_metadata() def set_common_metadata(self): self.metadata = { "python_version": ...,...

Thanks, this will be great to have! I think for maintainability, a TSV table with the "raw" data is preferable. I can add a script that converts it to the...

Also would be great to have the fval, gradient, and parameter vector for each model, if you still have that saved somewhere! Was your parameter vector for each model ever...

Thanks for raising this issue, and the thorough feedback! I am currently the only maintainer of this repo now -- unfortunately, I haven't worked with this model yet. What I...

> Hi @dilpath Why were these changes included? The original bounds and scales for the modified parameters in this pull request were originally set to be in linear scale with...