mpboot issues

Fix ras_pars_score isn't copied over when create new alignment

Fix ras_pars_score isn't copied over when create new alignment in remove duplicate sequences

mpbot on aarch64 - Support for M1, M2 and M3 chips

For those who are trying to run mpboot on aarch64, there is a way to do it. By installing Box86/Box64, the ubuntu starts running x86 and x64 applications. Here is...

sandrorsduarte

REOPEN: Add vectorization for sankoff computation

diepthihoang

Optimize function computeParsiomyTree

a2dalek

Compilation fails on clang due to a naming clash: ``` /tmp/mpboot-20200316-35235-1sckd9h/mpboot-1.1.0-Source/optimization.cpp:638:5: error: reference to 'vector' is ambiguous dg=vector(1,n); ^ /tmp/mpboot-20200316-35235-1sckd9h/mpboot-1.1.0-Source/optimization.cpp:99:9: note: candidate found by name lookup is 'vector' double *vector(long...

jonchang

using different weights for each column

Hi, is there an option where you can specify an input file with column weight file, which allows you to assign individual weights to each column of the alignment? The...

pzaharias