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hicPlotMatrix for translocations/CNVs
Hello, I was wondering if there is a way to plot CNVs and translocations (SVs) using hicPlotMatrix. I have identified CNVs and SVs with HiNT and made bed and bedpe coordinates files which I would like to plot (as circles) using all chromosomes. I have tried to use the command --loops to plot them but I guess it doesn't do it if coordinates are inter-chromosomals. Any suggestion or implementation in the future to do it? Thanks Pietro
Dear Pietro,
translocations is actually a topic I wanted to start working on later this year.
Right now, I am sorry that it will not work. Maybe I can add something for the plots to change this for a next release.
Best,
Joachim
