HiCExplorer
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multiple enzymes and multiple overhang
my processed are being killed, not sure why yet.
Is there a debug portion of the output available for each run? thank you
--restrictionSequence GAATC GAGTC GATTC GACTC GATC CTAAG CTGAG CTTAG CTCAG TTAA \
--danglingSequence AAT AGT ATT ACT GATC TAA TGA TTA TCA TA \
--restrictionCutFile GAATC.bed GAGTC.bed GATTC.bed GACTC.bed GATC.bed CTAAG.bed CTGAG.bed CTTAG.bed CTCAG.bed TTAA.bed \
If it gets killed it usually means you have to less memory on your computer.