schist
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dawe
An interface for Nested Stochastic Block Model for single cell analysis
While `schist` allows the analysis of multimodal data, it does so by passing a list of multiple `AnnData` objects. It would be nice to have support for `MuData`
There are some issues with `draw_tree`, that is - it doesn't take into account continuous values outside [0, 1] range (could be fixed rescaling data) - it raises some warnings...
Some functions in `tools` can now be deprecated and removed. One is `plug_state` as we don’t need it anymore, at least not in current form
Hello Dawe! I am trying to install Schist v0.8.3 on UGent HPC to provide this sw to researchers. We are using EasyBuild to build/install and provide sw - so I...
There's a hidden function to plug a block state into `adata.uns` slot (`scs._utils.plug_state()`). Unfortunately it has not been updated (yet) and should not be used, as it breaks everything.
Hi, @dawe . Thanks for developing SCHIST. I got the following error "ValueError: You need to run `pp.neighbors` first to compute a neighborhood graph." when I was running the function...
Hello, I installed schist with conda. When I imported the package I had the following error: ---------------------------------------------------------------------------AttributeError Traceback (most recent call last) Cell In[66], line 1----> 1 import schist as...
Not a good issue here: although one single state can typically fit in memory, multiple states are instantiated (default 100). Sometimes you don't have enough memory to fit them and...