Ed Davis

Incidentally, the gcc 4.8.5 was incorrectly determined to be g++ 12+ or something. Not sure how that happened, but it wasn't an issue when I used gcc 7 from devltoolset-7....

Anyone have any ideas why it's linking against lib*.so.1.1 and lib*.so.1.0.0. Seems like an error.

for what it's worth, I got it to work using the `ln` commands above, but we are restricted from using the latest pslcdnafilter as indicated.

Hi all, I run software installs on a HPC and install funannotate using conda. In order to allow multiple users to run the software, I wrote a script that copies...

> I found my error!!! Thanks for the support! @nextgenusfs When I copied the augustus config dir, the `parameters` dir wasn't transferred. This resolved it: > > ``` > rm...

We ran into this before. If the binaries are symlinked into a different directory, you run into a prefix error. Not sure if that's what is happening here, but something...

Actually, that error message isn't very precise. https://github.com/bwa-mem2/bwa-mem2/blob/bf3d376e95f4321b0d37a27d7ff1c77da4d289ff/src/runsimd.cpp#L95 There are several places in this function that return -1 and could cause the error message to print.

For completeness, I tested a second genus, _Paracoccus_, and got the same bug. Looks like that one also prefers the second row. Maybe I can try `rows = 2` and...

Ah I figured it was a regex but I didn't realize that it was like `grep -x`, which is why I thought it was a bug. I think having a...

I just got this same error. Would it be possible to add a check to see if there are any core proteins before attempting to continue?