David Stein
David Stein
Im having the same issue as @kangbw702
Thanks @jrzaurin ! Actually right now I am following your first suggestion and processing them as text. I was only concerned that this might become inefficient for many features if...
That would be awesome! Thanks for the great library!
Unfortunately, I can't share the data. I can investigate which variant(s) might be causing the issue. Do you have a sense of what type of variant might be problematic? Maybe...
It seems that removing the genotype and format fields resolve the issue.
I am very confused. I removed one of the format fields and it worked, so I tried on the original file again and it worked. Its odd because I was...
Ok the issue appears to be with splitting multiallelic positions. Running on my split file hangs while the combined multiallelic file proceeds successfully. I will follow up with more information...
Got it that makes sense. Would you expect the disk issue to mainly be a bottleneck during the writing of the output or are there intermediate steps that could be...
Got it, thanks. Ill try to do some benchmarking and update this issue later.