OrthoFinder
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some genes lost in OrthoGroup when running orthofinder with additional species
Hi, I want to get the orthologs of one certain gene (anchor gene) with orthofinder, then I ran orthofinder with the proteins of some species, however when I reran orthofinder with additional species, some genes appeared before didn't exist in the OrthoGroup that anchor gene was in. I am confused with it, what makes it happen? Thank you.