ERROR: external program called by OrthoFinder returned an error code: 137

[Xu-chy]

Hi David, I am currently running orthofinder on my pc . I am using orthofinder 2.5.4. And the program returns some errors now.

(orthofinder) soil@soil-PC:/media/soil/_dde_data/1_protein$ orthofinder -b Result_Jul14/WorkingDirectory/ -t 4 -a 4 ...... 2022-7-30 21:27:50 : Written final scores for species 271 to graph file 2022-7-30 21:27:50 : Written final scores for species 271 to graph file

ERROR: external program called by OrthoFinder returned an error code: 137

Command: mcl /media /soil/_dde_data/1_protein/Results_Jul14/WorkingDirectory/OrthoFinder/Results_Jul30/WorkingDirectory/Orthofinder_graph.txt -I 1.5 -o /media /soil/_dde_data/1_protein/Results_Jul14/WorkingDirectory/OrthoFinder/Results_Jul30/WorkingDirectory/clusters_Orthofinder_I1.5.txt -te 4 -V all

stdout

b' ' stderr

b'Killed\n' 2022-07-31 00:02:30 : Run MCL Traceback (most recent call last): File "/home/soil/miniconda3/envs/orthofinder/bin/orthofinder", line 7, in main(args) File "/home/soil/miniconda3/envs/orthofinder/bin/scripts_of/main.py", line 1791, in main DoOrthogroups(options, speciesInfo0bj, seqsInfo) File "/home/soil/miniconda3/envs/orthofinder/bin/scripts_of/main.py", line 1791, in DoOrthogroups
mcl.ConvertSingleIDsToIDPair(seqsInfo, clustersFilename, clustersFilename_pairs) File "/home/soil/miniconda3/envs/orthofinder/bin/scripts_of/mcl.py", line 78, in ConvertSigleIDsToIDPair with open(clustersFilename, 'r') as clusterFile, open(newFilename, "w") as output: FileNotFoundError: [Errno 2] No such file or directory: '/media/soil/_dde_data/1_protein/Results_Jul14/WorkingDirectory/OrthoFinder/Results_Jul30/WorkingDirectory/clusters_OrthoFinder_I1.5txt'

Actually I don't know what's wrong with it. Looking forward to your help.

Best Wishes!

[Statistic-Qin]

Have you solved your problem?