bulker
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databio
Manager for multi-container computing environments
I havent looked into how to fix this but there seems to be a bug in bulker that manifests with the above error whenever you use `bulker unload` and remove...
Our cluster recently updated its OS to Rocky8 and this has broken a lot of our analytical pipelines. I cant be certain that this is OS-related but it could be....
This does: - some maintenance - preps for yacman v1 - adds support for Python 3.12
One challenge I have is when I update a crate, it doesn't automatically update all the crates that *import* the updated crate. For example, `databio/nsheff` imports `databio/sciquill`. If I do...
one thing that's often confused me when using bulker is the importing of crates. for example, I don't know which crate actually contained the command I'm using, the one I'm...
The tutorial suggests using `-f` to load a manifest from the filesystem: https://bulker.databio.org/en/latest/tutorial/ with `bulker load demo -f http://big.databio.org/bulker/bulker/demo.yaml` It seems that this should instead instruct the user to use...
Ideally all the concepts in https://bulker.databio.org/en/latest/manifest/ could be represented by labels inside the software container already That way container authors can include these up front and (bulker) users won't have...
It would be nice to have a way to notify the user of what crate is currently active. This could be done by loading an environment variable upon activation, and...
if I activate a crate, bulker creates a new prompt, which is awesome. But It also overwrites my previously set prompt configuration in `PS1`. Is it possible to prepend or...
