RWTY
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danlwarren
R We There Yet?
Currently, if we try to combine a tree chain read from rb and another one from mb, check.chains() throws an error: somehow, only the multiPhylo from mb has $tip.label. Using...
When calculating the splits on a tree, `prop.part` includes all of the tips as a split, it's not mentioned in `?prop.part` but is referenced at the end of the first...
I am getting some unexpected behaviour when plotting multiple chains which have mostly converged to the same tree, after discarding lots of burn-in the cumulative ASDSF is still around 10%...
We've had two different people add new tree distance metrics to two different branches - Martin Smith on the master branch for RWTY 1 and Michelle Kendall on Rob's branch...
Hi, I've recently been interrogating the RF distance and established that it is not an excellent measure of tree distance, leading me to propose some alternatives ([paper](https://doi.org/10.1093/bioinformatics/btaa614), [R implementation](https://ms609.github.io/TreeDist/index.html)). Would...
I am trying to run diagnostics on revbayes outputs but always get an error like these ones:  thanks!
Right now it's hard-coded at 2, but it's easy to make this stuff N-dimensional. May have downstream impacts on other plots, though, which we'll want to take a hard look...
Yes it's Christmas and yes I'm on holiday, but I just ran across this and wanted to make a note of it for when I get back to work. Check...
NO idea what's happening here yet. More details are here though: https://discuss.ropensci.org/t/help-with-magick-package/1901
Something Rob brought up in conversation: it would be nice to have some way of comparing distributions of parameter estimates across chains to see whether they're significantly different.