minced

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minced doesn't find a repeat if it is at the start of the fasta file

1

Hi, It seems that MinCED is unable to identify repeats when they are right at the beginning of the fasta file. Adding any nucleotide before the first repeat fixes this....

Alan-Collins

output with no repeat&spacer

3

Hey, This time, when I used the minced to predict, I found that the repeat and spacer values ​​in the '*.gff' file were gone instead of '.' . But the...

1185307269

Java version required for minced?

1

I got error messages of running minced is as follow: Exception in thread "main" java.lang.UnsupportedClassVersionError: minced : Unsupported major.minor version 52.0 at java.lang.ClassLoader.defineClass1(Native Method) at java.lang.ClassLoader.defineClass(ClassLoader.java:800) at java.security.SecureClassLoader.defineClass(SecureClassLoader.java:142) at java.net.URLClassLoader.defineClass(URLClassLoader.java:449)...

top334

Output with too long spacers

2

Hey, By default the spacers should not be longer than 50bp, but in some cases arrays are identified even though some spacers are much longer than 50bp. See example below:...

Russel88

**A very useful tool. I used this tool to process the genomes of over 900 strains of Acinetobacter, but only over 50 strains of the genome were found to contain...

qianxin-kxy

java.io.FileNotFoundException: <file_name> (Too many open files) Error

4

First of all, thank you for your wonderful work. Minced has been very helpful in my recent work and it is much appreciated. I'm running minced 0.4.2 with the following...

tparket

portions of repeats annotated as spacers

2

**Preface**: Thanks for creating and maintaining minCED! I use your software often and rely on its output for [my own tools](https://github.com/acvill/CRISPRviewR/#background). I understand this issue is likely a problem with...

acvill