vadr
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install_github() fails
installation in github fails.
>
> ** R
> ** inst
> ** tests
> ** preparing package for lazy loading
> ** help
> *** installing help indices
> ** building package indices
> ** installing vignettes
> ** testing if installed package can be loaded
> Warning in .onLoad_macro(libname, pkgname) :
> vadr does not support JIT optimization level 2. Resetting to 1
> Error: package or namespace load failed for ‘vadr’:
> .onLoad failed in loadNamespace() for 'vadr', details:
> call: checkCompilerOptions(jitEnabled, newOptions)
> error: invalid compiler options: optimize(==1)<2 and jitEnabled(==3)>2
> Error: loading failed
> Execution halted
> ERROR: loading failed
> * removing ‘/home/josephus/R/x86_64-pc-linux-gnu-library/3.4/vadr’
> Installation failed: Command failed (1)
> > sessionInfo()
> R version 3.4.4 (2018-03-15)
> Platform: x86_64-pc-linux-gnu (64-bit)
> Running under: Ubuntu 16.04.5 LTS
>
> Matrix products: default
> BLAS: /usr/lib/libblas/libblas.so.3.6.0
> LAPACK: /usr/lib/lapack/liblapack.so.3.6.0
>
> locale:
> [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
> [3] LC_TIME=de_DE.UTF-8 LC_COLLATE=en_US.UTF-8
> [5] LC_MONETARY=de_DE.UTF-8 LC_MESSAGES=en_US.UTF-8
> [7] LC_PAPER=de_DE.UTF-8 LC_NAME=C
> [9] LC_ADDRESS=C LC_TELEPHONE=C
> [11] LC_MEASUREMENT=de_DE.UTF-8 LC_IDENTIFICATION=C
>
> attached base packages:
> [1] grid stats graphics grDevices utils datasets methods
> [8] base
>
> other attached packages:
> [1] devtools_1.13.6 seqLogo_1.44.0
>
> loaded via a namespace (and not attached):
> [1] httr_1.3.1 compiler_3.4.4 R6_2.2.2 tools_3.4.4 withr_2.1.2
> [6] curl_3.2 memoise_1.1.0 knitr_1.20 git2r_0.23.0 jsonlite_1.5
> [11] digest_0.6.17 stats4_3.4.4
>
I wanted to download again. this time with R version 3.6.0. Same jit error - running Ubuntu 18.04 LTS.