Omics issues

package NBBttest has been archived

1

maintainer was contacted on April 29th and removal is scheduled to May 20th

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package stochprofML has been archived

1

maintainer was contacted on April 29th and removal is scheduled to May 20th

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possible new packages to check

"ACNE" [added] "ActiveDriverWGS" [archived] "AEenrich" [2 versions and not updated since 2021] "afthd" [2 versions and not updated since 2021] "AGHmatrix" [genetics] "aglm" [not specific to omics] "allelematch" [genetics] "AllelicSeries"...

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packages suggested by CTVSuggest

"GANPAdata" -> included "PeakSegJoint" -> included "hgnc" -> included "scPloidy" -> not included - too recent "springer" -> not included - gene-environment interactions (genetics task view ?) "CAMML" "SparseDC" "MiRSEA"...

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package tinyarray archived from CRAN

1

The maintainer has been contacted on May 21st. Removal is scheduled to June 10th

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package RNAsmc has been archived

The maintainer has been contacted on May 21st. Removal is scheduled to June 10th

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Add link to compositional data ctv or some specific packages ?

Check ""High-dimensional compositional data with applications to the omics sciences" paragraph : - [FLORAL](https://cran.r-project.org/web/packages/FLORAL/index.html) - [coda4microbiome](https://cran.r-project.org/web/packages/coda4microbiome/index.html) - [codacore](https://cran.r-project.org/web/packages/codacore/index.html) [lnmCluster](https://cran.r-project.org/web/packages/lnmCluster/index.html) [MicrobiomeStat](https://cran.r-project.org/web/packages/MicrobiomeStat/index.html) [QFASA](https://cran.r-project.org/web/packages/QFASA/index.html)

julieaubert