allenCCF
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Registration of non-isocortical recording tracks
Thank you for this great tool, it is awesome!
It is clear though that its designer bear particular interest in cortical and subcortical recordings - in order to make the probe mapping work in the cerebellum, the top of the brain has to be re-called 'CBX' (Allen alias for cerebellar cortex) rather than 'Isocortex':
Display_Probe_Track.m, l.122:
isoCtxId = num2str(st.id(strcmp(st.acronym, 'CBX'))); %num2str(st.id(strcmp(st.acronym, 'Isocortex')));
I guess the universal acronym to use should be 'grey' or 'root', I will let the author decide.
Thanks again!
Thanks for the question and PRs! Most recent push should make it work for cerebellum and cortex.